Animal genetics training resources version II: Courses and Course Notes
   

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Courses and Course Notes


Title - Name

ANIMAL BREEDING3433

Highlights

Lecture notes, problem sets and examination questions are provided for the course Animal Breeding 3433 at Oklahoma State University. The course is about the application of genetic principles to livestock improvement; study of the genetic basis of selection and systems of mating; and the development of breeding programs based on principles of population genetics

Contact

Dr. Jerry Fitch, Department of Animal Science, Division of Agricultural Sciences and Natural Resources, Oklahoma State University

URL address

http://www.ansi.okstate.edu/course/3433/


Title - Name

ANIMAL MODELS

Highlights

Lecture notes, exercises and exams for the course Quantitative Genetics and Animal Models at University of Guelph, Canada. The objectives or scope of the course include basics of statistical animal models, study genetic evaluation methods using animal models, study estimation of genetic parameters for animal models and review practical applications of animal models in different species.

Contact

L.R. Schaeffer (E.mail:lrs@sherlock.aps.uoguelph.ca )

URL address

http://www.aps.uoguelph.ca/~lrs/Animalz/


Title - Name

BIOLOGY 65: BIODIVERSITY AND CONSERVATION

Highlights

The University of California at Irvine provides both on line and independent studies courses in Biodiversity and Conservation. The course satisfies the first requirement of the Interdisciplinary Minor in Global Sustainability. Hypertext book on Biodiversity and Conservation available at the website.

Contact

Peter J. Bryant, Professor, Department of Developmental and Cell Biology, University of California, Irvine, Irvine, California 92697, Phone: 949-824-4714, Fax: 949-824-3571, E:mail:pjbryant@uci.edu

URL address

http://darwin.bio.uci.edu/~sustain/bio65/


Title - Name

CANINE GENETICS

Highlights

Distance course focusing on simply inherited characteristics. Icludes lectures and lab exercises on basic genetic principles and seminars on particular characteristics. Access to the instructors and teaching assistants occur via e-mail and web-based discussion board.

Contact

Univ of Cornell, Dept of Animal Science

URL address

http://www.ansci.cornell.edu/cat/cg01/dogcourses.html


Title - Name

CLASS NOTES ON EVOLUTIONARY QUANTITATIVE GENETICS

Highlights

Class notes from a short course in Evolutionary Quantitative Genetics given by B. Walsh in 2006. The content is very current, ranging from using molecular markers to detect selection, quantitative genetics of microarrays, and the geometric constraints in multivariate trait response. About 350 pages.

The list of lectures are: Basic Statistical Machinery Linear Algebra and Linear Models Basic Concepts in Mendelian, Population and Quantitative Genetics Resemblance Between Relatives Basic Designs for Estimation of Genetic Parameters Inbreeding and Crossbreeding Genetic Drift Tests for Molecular Signatures of Selection Short-term Selection Response Analysis of Short-term Selection Experiments Long-Term Response and Selection Limits Individual Fitness and Measures of Univariate Selection Genetic Correlations and Multivariate Selection Response Measuring Multivariate Selection Phenotypic Evolution Models Major Genes, Polygenes, and QTLs QTL Mapping Quantitative Analysis of Regulatory Variation

Contact

Bruce Walsh, University of Arizona. (E.mail:jbwalsh@u.arizona.edu )

URL address

http://nitro.biosci.arizona.edu/workshops/Aarhus2006/notes.html


Title - Name

FELINE GENETICS

Highlights

Distance course focusing on simply inherited characteristics. Includes lectures and lab exercises on basic genetic principles and seminars on particular characteristics. Access to the instructors and teaching assistants occur via e-mail and web-based discussion board.

Contact

Univ of Cornell, Dept of Animal Science

URL address

http://www.ansci.cornell.edu/cat/fg01/catcourses.html


Title - Name

GENET (ANIMAL BREEDING COURSE MATERIALS IN FRENCH)

Highlights

Le réseau GÉNET a pour but de fournir un support pour l'enseignement de la Génétique en utilisant plus spécifiquement les ressources du multimédia.

Contenu: Code génétique, transcription, traduction; Génétique bactérienne; Génotype, phénotype, intéraction; Gène et transmission de l'information génétique; l'ADN et sa replication; Structure et fonction du gene; Chromosomes et Cytogénétique; Régulation de l'expression des genes; Modifications du matériel génétique; Recombinaison, réparation de l'AND; Eléments ransposables; Génomes extra-nucléaires; Les outils de génétique moléculaire; Analyse bioinformatique des sequences; Génétique du développement; Génétique humaine; Génétique des populations; Génétique moléculaire des populations; Génétique et evolution; Ethologie et écologie comportementale; Génétique quantitative; Ressources génétiques et selection; Gène-éthique.

Un glossaire de génétique

URL address

http://www.univ-tours.fr/genet/


Title - Name

GENETIC EVALUATION AND BREEDING PROGRAM DESIGN

Highlights

Course handouts and Power Point slides for the course Genetic Evaluation and Breeding Program Design at University of Armidale, Australia are provided as pdf-files.

Contact

Julius van der Werf (jvanderw@une.edu.au )

URL address

http://www-personal.une.edu.au/~jvanderw/422TOC.htm


Title - Name

GENETICS FOR A NEW GENERATION

Highlights

Internet-based educational resource on genetics designed to expose university undergraduates and the general population to the basic genetics concepts and principles; these are presented in a simple and concise manner. The following topics are covered: Basic concepts in genetics (e.g. cell structure, DNA, simple inheritance), Advanced concepts (e.g. chromosome mapping, mutations, genetics of complex traits); DNA-BioEngineering (techniques and applications), Animal Genetics (practice exercises, basic coat colour chemistry).

Contact

Prof. P.A. Oltenacu, Cornell Univ, Dept of Animal Science
Email: pao2@cornell.edu

URL address

http://www.ansci.cornell.edu/usdagen/usdamain.html


Title - Name

IDENTIFYING AND INCORPORATING GENETIC MARKERS AND MAJOR GENES IN ANIMAL BREEDING PROGRAMMES 

Highlights

Course notes on gene mapping & QTL in breeding . Includes the following parts: Introduction and building blocks, Linkage analysis and gene mapping, Detection and mapping of QTL, Marker Assisted Selection, and Exercises.

Contact

Julius van der Werf (jvanderw@une.edu.au )

URL address

http://www-personal.une.edu.au/~jvanderw/brazilcourse.html


Title - Name

INTRODUCTORY ANIMAL GENETICS

Highlights

This is not a distance course, but lecture handouts to PowerPoint slides for 17 lectures in the course, as well as Practice problems and Sample prelims are posted in the course web-site.

Contact

Prof. E.J. Pollak

URL address

http://www.ansci.cornell.edu/courses/as221/index.html


Title - Name

INTRODUCTION TO ANIMAL BREEDING

Highlights

PowerPoint presentation slides by prof E. Verrier, INA-PG, France from training course given in Hanoi 2004

URL address

http://www.inapg.inra.fr/dsa/uvf/AG/Prise-summary.htm


Title - Name

LRS NOTE SHOP

Highlights

L. Schaeffer’s course notes for courses given in Animal models, Quantitative genetics and Methodology in animal breeding.

URL address

http://www.aps.uoguelph.ca/~lrs/Animalz/


Title - Name

MODELS AND METHODS FOR GENETIC ANALYSIS

Highlights

The course notes include the following chapters: 1. Introduction to mixed models; 2. Mixed models for genetic analysis; 3. Genetic properties of the animal model; 4. Estimation of genetic parameters; and 5. Introduction to Bayesian statistics. Slides are also provided.

Contact

The notes were produced by J. van der Werf and M. Goddard. 2003

URL address

http://www-personal.une.edu.au/~jvanderw/aabc_materialsp2.htm


Title - Name

NYQUIST’S NOTES ON STATISTICAL GENETICS

Highlights

These notes provide basics in statistical genetics. They were written by prof. Wyman Nyquist for the advanced animal- and plant breeding students in the 1970s and 1980s. Examples of topics covered: General concepts; Genetic relationships and inbreeding; Polygenic and quantitative inheritance; Selection.

URL address

http://nitro.biosci.arizona.edu/nyquist/nyquist.html


Title - Name

POPULATION GENETICS

Highlights

These on-line course notes cover e.g. Mendelian genetics, deviations from Hardy-Weinberg equilibrium, relationship and inbreeding, test of simple genetic hypothesis, definition of quantitative traits, heritability, estimation of breeding values, genetic changes by selection, inbreeding, crossing, chromosome aberrations, genetics of hair and coat colour, estimation- and biotechnology and disease resistance. The notes contain some exercises as well. The site includes links to calculation examples and data programs. The notes can be downloaded as a pdf-file.

Contact

The notes were produced by Knud Christensen (kc@kvl.dk)

URL address

http://kursus.kvl.dk/shares/vetgen/_Popgen/
genetics/genetik.htm


Title - Name

QTL MAPPING FOR PRACTITIONERS, FROM LINKAGE TO GENE

Highlights

The course notes include the following parts: 1. Introduction and     principles of linkage analysis; 2. Models for QTL analysis; 3. From linkage analysis to gene detection; and,
4. Linkage disequilibrium mapping (LD) and bioinformatics approaches to identify QTL. Slides and software (QTLdet.xls) are also provided
 

Contact

The notes were produced by J. van der Werf, B. Hayes and M. Goddard. 2003

URL address

http://www-personal.une.edu.au/~jvanderw/
aabc_materialsp3.htm


Title - Name

QUANTITATIVE GENETICS

Highlights

These lecture notes were produced 1n 1995 by prof. Brian Kennedy. The following chapters are included: Large populations under random mating; Small populations - random mating; Selected populations; Gametic models; Other models; Computing ideas; Major genes.

URL address

http://www.aps.uoguelph.ca/~lrs/kennedy/


Title - Name

QUANTITATIVE GENETICS RESOURCES

Highlights

Provides lists and links to websites on books, class-notes, software, courses, meetings etc. in animal breeding and genetics.

Contact

Bruce Walsh (jbwalsh@u.arizona.edu )

URL address

http://nitro.biosci.arizona.edu/zbook/book.html


Title - Name

UNIVERSITIES WORLDWIDE LISTING

Highlights

This website contains links to the home pages of a large number of universities all over the world.

URL address

http://univ.cc/


Title - Name

WHAT’S A GENOME?

Highlights

This on-line book at the website of the Genomes News Network gives a lively and illustrative introduction to genomics; it covers chromosomes, genes, DNA, genome sequencing, genome maps, genome variations, etc

Contact

Genome News Network

URL address

http://www.genomenewsnetwork.org/resources/whats_a_genome/
Chp1_1_1.shtml